rs387598175 SNP Detail

Summary

• ID
  rs387598175
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:48226523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC TCCCCTCCCC TCCCCTCCAT
  K
  AAATGTTTGC CTTTGGAAGG GTTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	SEA/GnJ	ST/bJ	SWR/J
ss919282394	MGP_WTSI_8_47773488	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	G	G	T	G	T	T	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	SEA/GnJ	ST/bJ	SWR/J
rs387598175					SNP	T	T	T	G	G	G	T	G	T	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919282394	MGP_WTSI_8_47773488	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:48226523 () rs orientation: forward

Symbol	Name	Function Class
Gm45864	predicted gene 45864	67 bp upstream
Gm63845	predicted gene, 63845	within coordinates