rs387585693 SNP Detail

Summary

• ID
  rs387585693
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129942360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTC CAGCCTCATA TATATATATA
  T
  ATATACACAC ACACACACAC ACACA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	KK/HlJ	LG/J	MA/MyJ	NZB/BlNJ	PL/J	PWK/PhJ	RIIIS/J	SEA/GnJ	SM/J	ZALENDE/EiJ
ss640541104	FVB_NJ_4_129725811	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	KK/HlJ	LG/J	MA/MyJ	NZB/BlNJ	PL/J	PWK/PhJ	RIIIS/J	SEA/GnJ	SM/J	ZALENDE/EiJ
rs387585693					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640541104	FVB_NJ_4_129725811	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129942360 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col16a1	collagen, type XVI, alpha 1			Intron
				Noncoding-Transcript-Variant
Cpgi14919	CpG island 14919			465 bp distal
Gm12963	predicted gene 12963			145 bp upstream
Rr600421	regulatory region 600421			819 bp distal
Rr600422	regulatory region 600422			717 bp distal
Rr600423	regulatory region 600423			within coordinates
Rr600424	regulatory region 600424			1526 bp proximal
Tssr1308	transcription start site region 1308			968 bp downstream
Tssr39217	transcription start site region 39217			1178 bp downstream
Tssr39218	transcription start site region 39218			666 bp downstream
Tssr39219	transcription start site region 39219			638 bp downstream