rs38756992 SNP Detail

Summary

• ID
  rs38756992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86785578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC AGTGGAGTCC CATAGTGAGA
  R
  GACCCTTAGG ACCACATAAA CTAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss51749206	NES14799548	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		A	A		G	G		A
ss133359573	ENSMUSSNP3019215	ENSEMBL	ENSEMBL_Sanger	f	SNP						A
ss321847372	CHEV_6_86758590	CHEVERUD	SCREENING_POP	f	SNP									A			A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs38756992					SNP	A	A	A	A	A	A	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749206	NES14799548	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86785578 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr21	DNA Segment, Chr 6, Derry C. Roopenian 21	1670 bp distal
D6Mit29	DNA segment, Chr 6, Massachusetts Institute of Technology 29	1669 bp distal
Rr633520	regulatory region 633520	1673 bp distal
Rr633521	regulatory region 633521	1962 bp distal
Rr633522	regulatory region 633522	334 bp distal
Rr633523	regulatory region 633523	1216 bp proximal