rs38753564 SNP Detail

Summary

• ID
  rs38753564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108429445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTTCCAT AGCTACCATG
  TCTTTCTTAG CATTATTGTC AGTGACACTT CCTAAGAGAA GCCTGGTCAT CTTGTCCCCT
  GTCTTCAAAG TCTCCCTTAG AGAACAGACT CGATTGACAC TCTGGTGATG TCTTTGGATG
  CCCTGTAAAA TGGGGCACTG CCTAGGTTTC TGCCCTCTCC TTCCCACATA TTGTCCATCC
  Y
  TGTACCTGCA TGCAAGTAAA CTGGGTTAGG CAAGAATGTC TAACTGTGTA TGTGTCAGCT
  GAGCTGAGTA CCTTCCACAT ATGGTCTCGC TGAGTTCCTA GGAATGACCC ACAGAGTGGG
  ATCATGGGCA CTGACTCATC ACATTCAGAC TGAGCATGCC TCTTCTGCTA GCATATGCAG
  AAGCGTTTTT GGAGCACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51814019	NES14768875	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	C		C	C		C	C	T		C
ss133502652	ENSMUSSNP2908163	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T					C
ss321892729	CHEV_6_108402478	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38753564					SNP	C	T	T	T	T	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51814019	NES14768875	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108429445 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636110	regulatory region 636110	1872 bp distal
Rr636111	regulatory region 636111	1159 bp proximal