rs387497601 SNP Detail

Summary

• ID
  rs387497601
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117331858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGAGTGTGAG TGTGAGTGTG
  W
  GTGTGTGTGT GTGTGTGTGT GTGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss917023990	MGP_WTSI_4_117474661	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T	T	T	T	T	T	A	A	A	A	T	T	T	T	A	A	T	T	T	T	T	T	T	T	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs387497601					SNP	A	T	T	T	T	T	T	A	A	A	A	T	T	T	T	A	A	T	T	T	T	T	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917023990	MGP_WTSI_4_117474661	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117331858 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr598150	regulatory region 598150			58 bp distal
Rr598151	regulatory region 598151			1388 bp proximal
Tssr42983	transcription start site region 42983			630 bp upstream