rs38747061 SNP Detail

Summary

• ID
  rs38747061
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152056498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTCAAAGG GTATTGTGGC TCGGTATCAG TGGTGTTAGC
  CCATGCTCTC ATTCAGTAAT CCTGGTGTGA CAGAACTGAG CTGAGAAGTG GTAAAAAGAC
  W
  CAGCTTGGCA GTAGAAGGGA AGGAGAGGGT CGAAGGGCAA TGAAGTTAGG AAGCCTCTGC
  CACTGGCTTC CAAGTTATTT CAGGAGAATG AAGGAACAGC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676340	NES14645122	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38747061					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676340	NES14645122	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152056498 () rs orientation: forward

Symbol	Name	Function Class
Rr587536	regulatory region 587536	within coordinates
Rr587537	regulatory region 587537	1063 bp proximal
Tssr32408	transcription start site region 32408	849 bp downstream
Usp33	ubiquitin specific peptidase 33	Intron