rs38745659 SNP Detail

Summary

• ID
  rs38745659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101956035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGTTAAG GGTACTGTGT
  AGATACAGTT TAGATTTGTC TTCAAACAAA CCTACTATGA GAAAGATGAA TAGGGACAAT
  TACCACACTT CCACACAGAC AGAATAGTAA ATGTATTATC AACTTTTTGT GAATTAATAA
  TGACTTATTT TAGATAGGAG TAAAAGGTAC CATACAGAAA GTGGCACAAT GTTTGTTTTA
  Y
  GTAAATTATT CTAGATATAT GACTTGTACA ATTCAGAACG AAGTGGAAAG GAAAAAAATA
  GCTACGGGAG GCAGATCTTT CTTATTTATT ATTAAATAAA TTGGCATGCA GAGAGGTTCC
  ATTTACTCTG AGGGTCTGGC ATAGAGGGAT GTCTGTAGAA ACGTGCTGTG GATAATGTAG
  ATCGTTGCAG ATGAGGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51588923	NES14670337	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38745659					SNP	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51588923	NES14670337	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101956035 () rs orientation: forward

Symbol	Name	Function Class
Rr375477	regulatory region 375477	334 bp upstream
Rr407227	regulatory region 407227	118 bp proximal
Rr582166	regulatory region 582166	473 bp proximal