rs387419194 SNP Detail

Summary

• ID
  rs387419194
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130732899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT TCTTTCTTTC TTTCTTTCTT
  Y
  CTTCCTTCCT TCCTTCCTTC CTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CBA/J	I/LnJ	LEWES/EiJ	LG/J	RIIIS/J	SJL/J	SM/J	WSB/EiJ	ZALENDE/EiJ
ss916435941	MGP_WTSI_3_130939250	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CBA/J	I/LnJ	LEWES/EiJ	LG/J	RIIIS/J	SJL/J	SM/J	WSB/EiJ	ZALENDE/EiJ
rs387419194					SNP	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916435941	MGP_WTSI_3_130939250	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130732899 () rs orientation: forward

Symbol	Name	Function Class
2010110G14Rik	RIKEN cDNA 2010110G14 gene	1913 bp upstream
Rr585241	regulatory region 585241	1960 bp distal
Rr585242	regulatory region 585242	1128 bp proximal