rs387361189 SNP Detail

Summary

• ID
  rs387361189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135751012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG AAAGAAAGAA AGGAAGGAAG
  R
  AAGGAAGAAA GAAAGAAAGA AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss917097122	MGP_WTSI_4_136023701	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs387361189					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917097122	MGP_WTSI_4_136023701	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135751012 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	1587 bp distal
Gm68304	predicted gene, 68304	within coordinates
Rr398604	regulatory region 398604	1729 bp downstream
Rr602239	regulatory region 602239	1949 bp distal
Rr602240	regulatory region 602240	1690 bp distal
Rr602241	regulatory region 602241	1500 bp distal
Rr602242	regulatory region 602242	1801 bp proximal
Tssr44025	transcription start site region 44025	1965 bp upstream