rs38735977 SNP Detail

Summary

• ID
  rs38735977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102184294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGATTTTG AGATGTCTCA
  GAACAACAAA ACAAAACCCA AACCAACCAA CCAAAGAAAC AAACAAAAAA CTGCAGCAGG
  TGAAACTTGA TTCCAATAAT TCTGTGTAAC CCATACCTCA TTACTCCTCC TCCAAAAGGC
  ACTTGCAGGA TCCTGGTTTC ACAACTGTTC CTCGTTCTCT AGTGTCGTTG CCTCACTCAG
  Y
  AACAGTGGCA GCCTAGAGTT CTTCACCTGC TCAACAGGGG TCAGCCTGAC CTCCTTAGTT
  CTAGGAGCAG AAAACTGTGC ACCTCCACAG AGGCCACTAT TCCTAAGTGA GCCTTTAGTA
  TCTACTCTTT CCATGGCCAT AAATTTCCCA TCATGCCTTC CACTCTTCCA CCTCCCACCT
  ACTCTCTGTG GACTGTTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51586148	NES14666065	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38735977					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51586148	NES14666065	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102184294 () rs orientation: forward

Symbol	Name	Function Class
A230001M10Rik	RIKEN cDNA A230001M10 gene	within coordinates
Gm65464	predicted gene, 65464	within coordinates
Rr582219	regulatory region 582219	1379 bp distal
Rr582220	regulatory region 582220	985 bp distal
Rr582221	regulatory region 582221	968 bp distal