rs38735793 SNP Detail

Summary

• ID
  rs38735793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108814747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAAACA AAACGGATAC
  TGTACCTCTC AGTGGCTTCT CCTCCTGCAG CTAGCTGCAA GATAAGTTTA TGCTCCTCCT
  AAGCGCCTGT CTCTGTGCCT GTACATAGAC CAGACTACGC TAAATTATGA AGTATGAAGC
  TTGCCCCAAA CCCTAAGAGC CTTTAAGAAT CAGCACTTGT GCTTGTTTTC TGCAACTTCA
  Y
  GGTCCAGTCT CTCCTTTGAG GACCCCGTCC TTCTCTGCAC ACGCATCTCT CTCTCCTAAC
  TGCACTCTCA CTTTAAATCA TGGCTTTAGC TGGAAGGATC TCTCCTAACG GTTCATTCTG
  AAGGGTCATT TTCTGTTAGC TCCTTTTTAG GAATCTGCCA TTCTTCTCTT TAGCTTGTAA
  CACAGTACTT CAAGAACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51808895	NES14771193	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38735793					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51808895	NES14771193	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108814747 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr368139	regulatory region 368139			1660 bp downstream
Rr368140	regulatory region 368140			1412 bp downstream
Rr368141	regulatory region 368141			1795 bp upstream
Rr636220	regulatory region 636220			914 bp distal
Rr636221	regulatory region 636221			235 bp proximal
Rr636222	regulatory region 636222			1533 bp proximal
Tssr58109	transcription start site region 58109			1685 bp downstream
Tssr58110	transcription start site region 58110			1514 bp downstream
Tssr58111	transcription start site region 58111			1472 bp downstream
Tssr58112	transcription start site region 58112			1449 bp downstream
Tssr58113	transcription start site region 58113			1430 bp downstream
Tssr58114	transcription start site region 58114			1416 bp downstream
Tssr58115	transcription start site region 58115			1379 bp downstream
Tssr58116	transcription start site region 58116			1153 bp downstream
Tssr58117	transcription start site region 58117			1134 bp downstream
Tssr58118	transcription start site region 58118			1088 bp downstream
Tssr58119	transcription start site region 58119			1047 bp downstream
Tssr58120	transcription start site region 58120			1427 bp upstream