rs38726117 SNP Detail

Summary

• ID
  rs38726117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:107511066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCTCCCCT CCCTCCCTCT CCCTCTCTCA TATCTTTCAT
  ATCACCATTC TGGGTTTAGT TTTTATGTCT CAAGAGATAT AGACATAATA ATTTATTGAC
  Y
  TTGTATGATT TTACCAGTTA CTTGATTGAT AAATAGGCTA TTACCAATTA TACCTAAATG
  ATCTGGTATG TCTTCCTTAC CTTGCCAACT TTGAGATTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51827540	NES14777351	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C		C	C	T		C	C	C
ss133484738	ENSMUSSNP6236176	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38726117					SNP	C	C	C	C	C	C	C	C	T	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51827540	NES14777351	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:107511066 () rs orientation: forward

Symbol	Name	Function Class
Lrrn1	leucine rich repeat protein 1, neuronal	Intron
Rr636003	regulatory region 636003	392 bp proximal