rs38725840 SNP Detail

Summary

• ID
  rs38725840
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147160858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATCTGT GTGAAGCCCA
  GCTTCATTAG CTTCCTCCTA CGGGTAACTA CTCTCTCAGA AACAGCAATT CTAGTTTTAC
  AAGAGAAAAA AAAAAAGATG TTTACATGGT AAATGAAAAA ACTCCATTGT TTGAAAATAG
  CTCCAGTGTC ATGGTGAGAT TTCAGGACAG ACCTAGATCC AGGGGCGGCA GGTACTCTAA
  M
  ATACTTGGTA AAGTGCTTAG GACTGGAATG TTGATATCCT TTAAGTATTA CTAAATGTCA
  TATCATGTGT TAGGCAAAAA GAATAGAGTT GTAGCGCTGC AGCTCTAAAT GAAATTGCTT
  CTGTTTGTAT AGAATCTGCA GTGTGGATGC CTACACACTA CAGCTCAATA CCAAGAAAGG
  ACACACAGGC TCCACGGTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51046996	NES13892177	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38725840					SNP	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51046996	NES13892177	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147160858 () rs orientation: forward

Symbol	Name	Function Class
Rr587152	regulatory region 587152	108 bp proximal