rs387212829 SNP Detail

Summary

• ID
  rs387212829
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148718364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GGGGAGAGGG AGAGGGAGGG
  G
  GAGAGGGAGA GGGAGGGAGA GAGGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	PL/J	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss915744237	MGP_WTSI_2_148876444	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	PL/J	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs387212829					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915744237	MGP_WTSI_2_148876444	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148718364 () rs orientation: forward

Symbol	Name	Function Class
Cst3	cystatin C	932 bp upstream
Rr374041	regulatory region 374041	237 bp downstream
Rr566976	regulatory region 566976	891 bp distal
Rr566977	regulatory region 566977	378 bp distal
Rr566978	regulatory region 566978	635 bp proximal
Tssr20682	transcription start site region 20682	1273 bp downstream
Tssr20683	transcription start site region 20683	1188 bp downstream
Tssr26688	transcription start site region 26688	1000 bp upstream
Tssr26689	transcription start site region 26689	956 bp upstream
Tssr26690	transcription start site region 26690	828 bp upstream
Tssr26691	transcription start site region 26691	803 bp upstream