rs387013597 SNP Detail

Summary

• ID
  rs387013597
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:105666196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT TCCCCTCCCT CCCTCCCTCC
  T
  TCCCTCCCTC CCTCCCTCCC TCCCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	CE/J	DBA/2J	MA/MyJ	NOD/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SWR/J
ss922503539	MGP_WTSI_14_105428762	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	CE/J	DBA/2J	MA/MyJ	NOD/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SWR/J
rs387013597					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922503539	MGP_WTSI_14_105428762	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:105666196 () rs orientation: forward

Symbol	Name	Function Class
5430440P10Rik	RIKEN cDNA 5430440P10 gene	within coordinates
Rr497207	regulatory region 497207	1525 bp distal
Rr497208	regulatory region 497208	1195 bp distal
Rr497209	regulatory region 497209	1212 bp distal
Rr497210	regulatory region 497210	605 bp distal
Rr497211	regulatory region 497211	1030 bp proximal