rs38700089 SNP Detail

Summary

• ID
  rs38700089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69665322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTA GCTGTCACCT TTATGATGAT
  R
  ATCAACACTG ATGAAGCAAT ATGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss50978630	NES13928525	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	G	A	G	A	G		G	G	G	G
ss135271422	ENSMUSSNP5342011	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320793834	CHEV_3_69561911	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs38700089					SNP	A	G	G	A	A	G	A	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978630	NES13928525	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69665322 () rs orientation: forward

Symbol	Name	Function Class
9530051E23Rik	RIKEN cDNA 9530051E23 gene	1616 bp downstream
Rr375162	regulatory region 375162	1650 bp downstream
Rr578224	regulatory region 578224	1099 bp distal
Rr578225	regulatory region 578225	1317 bp distal