rs38699765 SNP Detail

Summary

• ID
  rs38699765
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112186701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTG CCGAGCAACC AGAATGGTGA
  S
  AGCTGAGACC TGGGCACAGG GATAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51832911	NES14763396	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	G	C	G	C	C	G	C
ss133558910	ENSMUSSNP2068245	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38699765					SNP	C	C	C	C	C	C	C	G	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51832911	NES14763396	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112186701 () rs orientation: forward

Symbol	Name	Function Class
1700054K19Rik	RIKEN cDNA 1700054K19 gene	968 bp upstream
Rr636307	regulatory region 636307	798 bp distal
Rr636308	regulatory region 636308	759 bp distal
Rr636309	regulatory region 636309	453 bp proximal
Rr636310	regulatory region 636310	954 bp proximal
Rr636311	regulatory region 636311	1414 bp proximal