rs386987907 SNP Detail

Summary

• ID
  rs386987907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78853922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCC AACTGAGCCC ACACTGAGCC
  Y
  ACACTGAGCC CACACTGAGC CCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	MA/MyJ	PL/J	RIIIS/J	SWR/J
ss916227721	MGP_WTSI_3_78946615	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	T	T	T	T	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	MA/MyJ	PL/J	RIIIS/J	SWR/J
rs386987907					SNP	T	C	T	T	T	T	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916227721	MGP_WTSI_3_78946615	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78853922 () rs orientation: forward

Symbol	Name	Function Class
Gm65474	predicted gene, 65474	1631 bp upstream
Rr578444	regulatory region 578444	1541 bp proximal
Rr578445	regulatory region 578445	1642 bp proximal
Rr578446	regulatory region 578446	1810 bp proximal