rs38695298 SNP Detail

Summary

• ID
  rs38695298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83544625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGATCCT TATCTCATAT
  TTTCTGGTTT CTGAAGTTAA TCATGGAAGA AGAAAGCCTG AGCACGGGAG AGCCCTTCTT
  TGGTCTATAA ACCCCAATCC CAGTAAACGC CTTCAATATG GGTGATGGTT AACTTTCGGA
  AGGAGGATTT GTGTTGGAGG AGGCTCACAC AGTACAGCAC ACCAGGGCTG CTTGACTATT
  Y
  GGAGTCCCTC CTGTGCAGCC TCCTGATGCC CATAAAAAGC TGTGAAAGAA TCCACAGGCT
  GCCTTATTGT CTGTGCTCAT CATGAAAGTA TGTACTGATC CCACATGCTG GAGATCTTTC
  TTCTATACTG GGGTCTGCAA AAGGCAACAC ATTCCTTCAG CAGGAAAACT ACTACCAAGA
  GGGGAGATAT GCCTGATGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51353807	NES13744949	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C		C	C		C
ss321844562	CHEV_6_83517637	CHEVERUD	SCREENING_POP	f	SNP									T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38695298					SNP	C	C	T	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353807	NES13744949	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83544625 () rs orientation: forward

Symbol	Name	Function Class
Gm21284	predicted gene, 21284	396 bp upstream
Rr632893	regulatory region 632893	1327 bp proximal
Stambp	STAM binding protein	Intron