rs38687182 SNP Detail

Summary

• ID
  rs38687182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135713271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACATGCTC CACAGCATGG
  AAGAGCAGCA TTCCAGCCCC ATAACAAGTT TTTCCTTCTG AAATGTATAG ATTGCCACAG
  CCCCTAACCC TCCAATGACT AGACTTGCCC TCGGAGATGT TGACACTCCC TCCTTGGTTA
  AAGCCTTTAT TTTCCATTGT TCTCTGTACT TCTTGCTTGC TCTATTCTCT GCAAGGCATG
  Y
  ACTCCTCAGG GTTACTACCT TAGCATGAAA GTACAAACGG AACAACTGAT CTGAGAACAC
  TGCATGCCTA ATGTTAATGT TGATGGAATG TCAGAATCAG CGTCGGTGGT GATGTGAGGT
  CTCAGCCCTG CCTTCCTGGA CTTTCCAAGC ACTCTGCCCT CACTTTCTAA TCATACACAG
  ACCCCAGAGA CCTCTCGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss51645107	NES14649047	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs38687182					SNP	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51645107	NES14649047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135713271 () rs orientation: forward

Symbol	Name	Function Class
Rr585801	regulatory region 585801	within coordinates