rs38686157 SNP Detail

Summary

• ID
  rs38686157
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128128448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC CAAGAACCAA GGAGGCAGAC
  D
  AAGAAGATAC ACACAGGAGC AGAAG                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50948045	NES14141711	PERLEGEN	MM_PANEL2	f	SNP	G			A	G	A	G	G	A	A	A		A	A		G
ss147739304	ENSMUSSNP1883342	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss323532975	CHEV_10_127729635	CHEVERUD	SCREENING_POP	f	SNP												A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38686157					SNP	G	G	G	A	G	A	G	G	A	A	A	A	A	A	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50948045	NES14141711	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128128448 () rs orientation: forward

Symbol	Name	Function Class
Stat2	signal transducer and activator of transcription 2	mRNA-UTR
Tssr96388	transcription start site region 96388	80 bp downstream