rs38682856 SNP Detail

Summary

• ID
  rs38682856
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146993327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAATGGT TATTTTCACA
  AGCCCAGGAG GACCTGTCCC TTAGACGTGC TTTGTAATTG TACTTTCTGC AGCTTGCTAG
  GAGGAAAGTG ACTACATCAT TAGGTGGTCA TGCTTAGAAG GCCGTCAAAA GCCACATCTA
  CACAACCCAA GCAGACGACG CTAAACAAAA AGTGTTGAAA GATGTGCATG GCTGAGTGGC
  W
  CACTTAGAAA TGCCTTTCTC TGCCATGGGT TATAGAAACG TTTGCAACTG ATAAATGACC
  TGCTGGAGAA TGTAGCTTGT TGGGGGTGCT GACATCCAGT AGGTGTTAGC AATTATGCTC
  CTCTGACAGG GCTCGCAGCC ACACCTCTGG CATTCTTTTC CAGAGACTGA GAGCATTGAT
  GATGGGAGGG TGATCAGTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51048952	NES13897448	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38682856					SNP	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51048952	NES13897448	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146993327 () rs orientation: forward

Symbol	Name	Function Class
Rr587143	regulatory region 587143	within coordinates