rs38682489 SNP Detail

Summary

• ID
  rs38682489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65948673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTAGCCT CTGGTAACCA
  ATGCTTTTCT GTTTTAGCTG AGCTCAGTGG TTTTAGATTG CATATTCAAG TGAGACCATA
  CAGCGATTGT CTTTCTGCGC CTGGCAAATT TCAGTGACTC GTGTTTCCAG GTCTGCATAT
  GTTGTTTTAA TGGTTGAATT TCCTTATTTC TAAAAGATGA ATGGTATGTT GTATGTACTC
  R
  CCACATTTTC TTTACTCATT CATCTACGGG ATGACATTTA GGCAGATTCC ATAGCTTGAC
  TATTAAGAAA CACGGGAATG CAGACAGCTC TTTAGCATGC CAACTATAAA TCTTTTAGAT
  AAATACTTAG AAGTGGGATT GCTGACTTGT AAGATAAATC TTTTTTTTTT CATCTTTTGA
  GGAATTTCTA TACAGATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51539402	NES14688502	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38682489					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51539402	NES14688502	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65948673 () rs orientation: forward

Symbol	Name	Function Class
Rr375126	regulatory region 375126	1026 bp upstream
Rr577786	regulatory region 577786	within coordinates