rs38680635 SNP Detail

Summary

• ID
  rs38680635
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57522671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTCTGTA CACCTCCTGG
  AATTACAGGT GTATGCCATA AAGGTGTCAA GAGCTCATCT ATTTCCTGAA GATGCCTTAA
  TGTAAAGGAA ATTAGGATCC TCAGACATAC TTCTATGGTG AAATTAGACA ACACTTTGCT
  GAATCCAAAT GACAATAGCA TAGCTGTTCC CTAAATCTGC CTACCTTGAA GTAAGCAATA
  M
  AGGAAGATAT AGGAAGCCAT AACCTGGCAG GAAGGCAGAG TTCTATGACA GTAGAAGGAA
  GGAGGTAAAA TGGTTATCAG TTTGCCATCA TTGGGAACTT ATCCTGAAAT GTGTTTCAGT
  GTAAGTAGCA AAAAAAAAAA AGACAAAACT ATTCCTTTTC TGAGTTGGCA ATGAGTGATA
  TAACTCCTCT TTTTCTGTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51315039	NES13763307	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs38680635					SNP	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315039	NES13763307	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57522671 () rs orientation: forward

Symbol	Name	Function Class
Gm45193	predicted gene 45193	within coordinates
Gm66279	predicted gene, 66279	within coordinates
Rr631144	regulatory region 631144	1798 bp distal
Rr631145	regulatory region 631145	222 bp distal