rs38676749 SNP Detail

Summary

• ID
  rs38676749
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:49864514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAAGTTT CCAGGTCTAT
  GTAACTAAAC TAAGCTTAAA GAAAGACAAA ACTACCACTC AGAGGTCCCT CTTTGCAAGG
  TCACCGCCAT TGTTATTAAG TCAAAATCAG GGGCAGTTTC AGCATCCCCT TATTCTCTGT
  CTGTTGTCAG TGGGCCCCTC ATATCACCTC ACCCTTCTTG AAAGCCTGAT TTGGTGGCCA
  K
  TACTGAGCCT GTGGAGTTAT CTTCAGGGTC ACTTCTTTCT CCATCTGGGA TTAAATCTTG
  ATGCTTTGCA GTATACCATT ACCAAATGTA CCTCTTTCCA CATGCTCTCG TTGTTTGTTA
  TAGCCTTGGC TGCACAAGAA ATACTGATGA ATCCCCAAAC GACATTTCTA TGTTTCTTGT
  TCATGTTTTG TATTAATTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51520441	NES14697907	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38676749					SNP	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51520441	NES14697907	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:49864514 () rs orientation: forward

Symbol	Name	Function Class
Rr576122	regulatory region 576122	574 bp distal