rs38676191 SNP Detail

Summary

• ID
  rs38676191
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143912403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGTTAA TACTAGGGTT
  GATTATTAAT AGTAAGTTCC AGAGAGATTT TTCTGTTGGA AATTATCATG GAAGTGCAAA
  GCTGTACTGC TAAGTATCAT TAACTAAAAC CAGTCTTGTG GGAGAAGCTT GGAAGAAAGG
  AAGTTGAAGA AAAATCAGGC AAAAAATCTA CAGTCCTAGC AGCTGTGTGC AGAATTTTGG
  Y
  TCTTTAAACT GCCAAAATTA GGGCAAAGGA ATAAATATTG CCTATGAAAC CAGGAAGAGG
  GTGGTTTTAA TACCAGTTAA AAATACTCAT TTCTGGATTC TAGCTCCTTG AGTTCCTAAC
  ATGCTACAGT TAAAAATTAT TTTTATGGAT TTGTATTTAA CGTTGTGTTC TTATGATCAT
  TCACCTTAAA AGCTTTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51655523	NES14643412	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38676191					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51655523	NES14643412	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143912403 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13895	CpG island 13895	682 bp distal
Lmo4	LIM domain only 4	1422 bp upstream
Rr398096	regulatory region 398096	862 bp downstream
Rr586601	regulatory region 586601	1433 bp distal
Rr586602	regulatory region 586602	932 bp distal
Rr586603	regulatory region 586603	822 bp proximal
Tssr35968	transcription start site region 35968	1764 bp upstream
Tssr35969	transcription start site region 35969	1713 bp upstream
Tssr35970	transcription start site region 35970	1661 bp upstream
Tssr35971	transcription start site region 35971	1434 bp upstream
Tssr35972	transcription start site region 35972	1112 bp upstream
Tssr35973	transcription start site region 35973	657 bp upstream