rs38675938 SNP Detail

Summary

• ID
  rs38675938
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:118354988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGAGGAG GGAATCATAT
  GATTCCAAAA TTATCATGAT CTAGCCAATA GGACGAAGTG CCCTGTGTGC CTTAAAAGAA
  ACAGATAGCA CCATGAGAGA AGATGTCCGA CTTAGAAAAT GGTCTGGCGC CTAGGCTGCC
  ACAAAGTTGA GGAGAGGACT AGTCTGATGA CATCATTGTT TCTCCCTACC AACTATGTGA
  S
  CAAATGCACA AAATAAACAA CCCCTGTTCA TATTTATGAA CGTCACATTT TAGAATATTA
  CTATATATTT TTAAAAAAAT AGGCATGGAC TGCCATGCAG AAAGAAAGCC TTGATCCTCT
  ACAGATACCC TTTCACTAAA GTAGTAGCTC TCAACATGTG CATGGAGACC CCTCTGGGAC
  TCTTTTGGGA GTGGAAAGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51603617	NES14666224	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38675938					SNP	C	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51603617	NES14666224	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118354988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13752	CpG island 13752	693 bp proximal
Dpyd	dihydropyrimidine dehydrogenase	790 bp upstream
Rr583905	regulatory region 583905	324 bp proximal
Rr583906	regulatory region 583906	852 bp proximal
Tssr31414	transcription start site region 31414	806 bp upstream
Tssr31415	transcription start site region 31415	823 bp upstream