rs38669222 SNP Detail

Summary

• ID
  rs38669222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108205337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTTTTT TTCTTGTTTT
  GAAAGTAGGC CTTATTTTGT AGCCTACGTA GACCTAAAAC TCGTGCTAAA GTCCAGGCTC
  GAACCTGTGG TTTTAAAGTC CACGGACTGG TGCTAAGTTG GCTTCTGTGT TCCTTGAGCT
  TCCTGTCCAC TTGTAAGGAT CTTGTGACAG ACGACAGGTG TGGTGTTCTG GTGACTTCTC
  R
  GTTAATAAAA AGTGTTCTAA TTTAGACTTA GTTTGAGGAG TTCCCAACTT TTAAATTCTG
  AGTTGTGTGT GTACGCGAAA GTTAAATTTT TTTTAAAGGA AAAGTAATGT AAGTGCTATT
  AATTTAAGTG TGTGCAGGAG ATGGGAAAAT GATAATAAAT GAGGTTTTTT TTTTTTTTTT
  TTGTCATCCC CCCCCCCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51819383	NES14773338	PERLEGEN	MM_PANEL2	f	SNP		G	A	G	A	G	A	A	G	A	G	A
ss133497871	ENSMUSSNP6151005	ENSEMBL	ENSEMBL_Sanger	f	SNP	G					G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38669222					SNP	G	G	A	G	A	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51819383	NES14773338	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108205337 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636058	regulatory region 636058	within coordinates