rs38660285 SNP Detail

Summary

• ID
  rs38660285
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89010203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCTTTGT TCTCCATGTT
  GTCCCTGTGA CACAGACCTG TCCTCCATTC CATGTCATTC TCCTTCCTGG GAAGGACCTG
  GGGCTGATCT GGAATGGGTG GAGCCTCAGG CTTCTTCCTG TCCTGCTGTG GACTGCAAGG
  ATGGGGGAAC ACGTGAGATG CTCACACGGG TGTGGGGAAG GCCTGTGGGA ATACAGAATG
  R
  GATTCCTCAC GAATAGCTGG GTCCAGTCAC ACAACCCTTT AATTGGCATC CGTGAACATC
  AGTTGTTCGT AAGTGAGGCT TGGCATGAAT CACCTGGGGA TCTTGTTAAG AACCCAGAAC
  TAAGCCAGTA AGTTCAGGGT GATATATATC TGGTTACAAG TGACAGAACA TCAACTACCT
  AAGCCCACCG GGAATTGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51760915	NES14794785	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38660285					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51760915	NES14794785	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89010203 () rs orientation: forward

Symbol	Name	Function Class
Gm66902	predicted gene, 66902	within coordinates
Rr1306	regulatory region 1306	1455 bp proximal
Rr634069	regulatory region 634069	869 bp proximal
Rr634070	regulatory region 634070	1823 bp proximal