rs38633446 SNP Detail

Summary

• ID
  rs38633446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69662993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAATCTAT GGGGGTGGGT
  ATTGTCTGTT GGCTGGCAAA ACTTATATGT ATGCTCAAGG TCTGCAGTTT TCTATCAGTA
  TACAAGGGTT TCTCTTTTTT GACTTTGGCA AACACTTTTA TAATATTATA GGGTTTTCCA
  TTTTAATTTT TTGTCAGCTT GGAAGGTGAC AAAAGTAGTG TTCATTTTAA TTACATTTGT
  Y
  AGATTACATA TTGAATAACC TTTCATTATC TAGATACTTG AGATTCCATT TCTGAGTGTT
  GATTTGAAGA TATTTCTTAC ATAAGTAGCT CTTGATGGTT TTGGACATTG ATATATCCTG
  ATGTTTTTGC CTTTTTTTGC TAAACAAGTT TCACTTTGAC GTAGTTAACA GTCATACATT
  GTTTTTGTTA AGATTTACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50978684	NES13928537	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38633446					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978684	NES13928537	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69662993 () rs orientation: forward

Symbol	Name	Function Class
9530051E23Rik	RIKEN cDNA 9530051E23 gene	within coordinates
Rr375162	regulatory region 375162	within coordinates
Rr578222	regulatory region 578222	196 bp distal
Rr578223	regulatory region 578223	303 bp distal
Rr578224	regulatory region 578224	754 bp proximal
Rr578225	regulatory region 578225	991 bp proximal