rs38631855 SNP Detail

Summary

• ID
  rs38631855
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82937288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCAAAGT TCCAGGTAGA
  AAGAAAAACT CCTCCTCAAA CGATATAAGC AATAATACAT TCTGTTACCA TAAATGAAGT
  TACAATCAAG TAATCAGATG TGATTAAACT GTTTACCTCC TAGCCTCCAT TTTCAAACCC
  TCAAGCCATT TCTGGATTTA TTCGGATTCC TTGTCACGTT AGGACAGTGT GACTAATACC
  M
  GTGGATGACT CTCCTGTGGA ACAATCTGAT TAAACTGAAA ACTTGCAGAT TATACATCCA
  GAGAAAAAAC CATAATAGAG TAAAGAATAA AGTGTAGAAA TACTTATAAG CAATTTCCTT
  TTTCTTTTTT TATTTATTTG TTTTTAGATT TTAGAAGTAA ATCAGACTGC AGCTATTTGC
  ATACCTTTCT TTTTCCGTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50990094	NES13925790	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38631855					SNP	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990094	NES13925790	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82937288 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Intron
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	1717 bp upstream
Tssr29661	transcription start site region 29661	1433 bp downstream
Tssr29662	transcription start site region 29662	1384 bp downstream
Tssr29663	transcription start site region 29663	1367 bp downstream
Tssr29664	transcription start site region 29664	884 bp downstream
Tssr29665	transcription start site region 29665	845 bp downstream
Tssr29666	transcription start site region 29666	809 bp downstream
Tssr29667	transcription start site region 29667	766 bp downstream
Tssr29668	transcription start site region 29668	217 bp upstream
Tssr29669	transcription start site region 29669	261 bp upstream
Tssr29670	transcription start site region 29670	305 bp upstream
Tssr29671	transcription start site region 29671	849 bp upstream
Tssr29672	transcription start site region 29672	952 bp upstream
Tssr29673	transcription start site region 29673	980 bp upstream
Tssr29674	transcription start site region 29674	1029 bp upstream
Tssr29675	transcription start site region 29675	1039 bp upstream
Tssr29676	transcription start site region 29676	1049 bp upstream
Tssr29677	transcription start site region 29677	1066 bp upstream
Tssr29678	transcription start site region 29678	1145 bp upstream
Tssr29679	transcription start site region 29679	1189 bp upstream
Tssr29680	transcription start site region 29680	1212 bp upstream
Tssr29681	transcription start site region 29681	1314 bp upstream
Tssr29682	transcription start site region 29682	1337 bp upstream
Tssr29683	transcription start site region 29683	1380 bp upstream
Tssr29684	transcription start site region 29684	1405 bp upstream
Tssr29685	transcription start site region 29685	1446 bp upstream
Tssr29686	transcription start site region 29686	1512 bp upstream
Tssr29687	transcription start site region 29687	1610 bp upstream
Tssr29688	transcription start site region 29688	1634 bp upstream
Tssr29689	transcription start site region 29689	1660 bp upstream
Tssr29690	transcription start site region 29690	1690 bp upstream
Tssr29691	transcription start site region 29691	1736 bp upstream
Tssr29692	transcription start site region 29692	1752 bp upstream
Tssr29693	transcription start site region 29693	1783 bp upstream
Tssr29694	transcription start site region 29694	1816 bp upstream
Tssr29695	transcription start site region 29695	1842 bp upstream
Tssr29696	transcription start site region 29696	1855 bp upstream
Tssr29697	transcription start site region 29697	1879 bp upstream
Tssr33800	transcription start site region 33800	1121 bp downstream
Tssr33801	transcription start site region 33801	1466 bp downstream
Tssr33802	transcription start site region 33802	1602 bp downstream