rs38622192 SNP Detail

Summary

• ID
  rs38622192
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116646970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCCTTTA AGATTCCTCA
  CTGGGCTGAT TGGAGTCTGC TGTCACTTAC TCTCAAGCTC ACAGTGTCTC AGTGAGTTGC
  AGTATACCTA AGGGGTGACT TAGAGACTAT TGCTGTCAGG GAGAGCTTGA AGAGGGAGAA
  CATCCACTCC TGAGGAAGCA GAGTGGAGCA CTCTCTTGAA CCGTCTTCCT TAGTGCTGAA
  M
  CGCCCTATTC CCTGGGCAGG GTGTCCAAAC ACAAGCATCT CCAATGGCCT ACTTTCATTC
  TTTTGCAATA AAAATCCACA ATCATAATCT TATCTGGAAC CCAGTGCTCA GAGAGATGAT
  CCTTGGTAGA AATAGATGAA GAGAGGCCTG GCCTGCCACC CAGGCAAGTC AGAAGCAGCC
  CCTGATAGAA CCAGACAGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51859258	NES14882307	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	C	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38622192					SNP	A	A	A	A	C	C	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859258	NES14882307	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116646970 () rs orientation: forward

Symbol	Name	Function Class
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	903 bp distal
Rr637229	regulatory region 637229	826 bp distal
Rr637230	regulatory region 637230	within coordinates
Rr637231	regulatory region 637231	251 bp proximal
Rr637232	regulatory region 637232	1230 bp proximal
Tssr58383	transcription start site region 58383	611 bp downstream
Tssr58384	transcription start site region 58384	542 bp downstream
Tssr58385	transcription start site region 58385	1536 bp upstream
Tssr58386	transcription start site region 58386	1785 bp upstream
Tssr62604	transcription start site region 62604	1618 bp upstream
Tssr62605	transcription start site region 62605	1594 bp upstream
Tssr62606	transcription start site region 62606	1398 bp downstream