rs38619840 SNP Detail

Summary

• ID
  rs38619840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117435250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCTCTAG AAGAACTTTG
  AGATTTGCTG TACACAGGAA AAAGAGAGCT GTAATTTGCC TGTGTCACGG CTTATAAGGC
  TTAAGTGTAA TGGGTGCACA GTATCTATGG TTATAGACTC AGCTTCTGCC TTTGGTCCTA
  GGAACCAGCA TGAACCAGAA TAATCTCTCT CTCTCATGGA AATGTCACAT CATCAAACTA
  R
  CTTAGAAACA GATGCTCCCC AAAGCAGGAT ATATACAGTC ACAAAAGATG CACCCTCCAC
  TCATAGAAGT GTCTTCCAGT CTAAGCCCTC AGGAAAGGAA CTCTGAAGCA ACCCACTTTT
  TCATTTGGTC TTTCTCCATT TCTTCAGCTC TCAATGCTTG AGGTTCTACT GTATTAGGAA
  TGTTCCCACC CAGGGCCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51408791	NES13707238	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38619840					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51408791	NES13707238	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117435250 () rs orientation: forward

Symbol	Name	Function Class
Rr637324	regulatory region 637324	1950 bp proximal