rs38619629 SNP Detail

Summary

• ID
  rs38619629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117435881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAAGGA AAGGAAGGAA
  GGAAGGAAGG AACGAAGGAA GGAAGGAAGG AAGGAAGGAA GGAAGGAAAG GAAGGAAGGA
  AGGAAGGAAG GAAGGAAGGA AGGAAGGATG GGAAGGAAGG AAGGAAGGAT GGGAAGGAAG
  GAAAGATGAG AGAGAGAGAA AGAAAAAAGA GGGAAAGAAA AATGAGCTGC CATCAAGACA
  Y
  TCAACCTTAA AGAAGTGTAA GATAGCTCTC CACCCTCCCA AGCTATGACA CTTCTCTTCT
  TCCACTTTAG CCTTTGACCT TTGGTGAGGT CATTGCCTGT TGTGCTTATG GTCAGGGTTC
  CTTTGAGGAC AAGCTGCCTG AGGAGTTACC TTCAGACCTT TTGTTATTAT ACAAAATCAG
  ACCTAAATTG AAACTCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss51408783	NES13707166	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs38619629					SNP	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51408783	NES13707166	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117435881 () rs orientation: forward

Symbol	Name	Function Class
Rr637324	regulatory region 637324	1319 bp proximal