rs38608676 SNP Detail

Summary

• ID
  rs38608676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123026603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGATGAG TTAAGAATCT
  GCTTTCCTGA AGAGTATCCT TTGAGTGTGT GTTACAAAGG CTTGCTTTGC ATTACAGATG
  TAGAGAAAAA TACCAGTTAC TTGGACTTTA AGTTTTTCAG TTTAAATGTC AATGAAAACG
  TTCACTAAAA TTCTTCTCTT TTTTAGGGTT CGTATACTGT TCAGTATACC AGGCAAATGT
  Y
  AAAAAATACT TGTGCATCTC TCATAAGTAA CTAATTTTTT TACTAGAAAG ATATTTCCTG
  GGAATTAAAA AGTAATTAAA TTCCTAATCT TAATGATGCT GAATTTTATA CTACTATTTC
  AGCCAGTTAG GATTTCTACA TAGGATTATA AAATAACCTA GATGTTTAAA TATTTTATTA
  CAAGCTAAAG GGCATGATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ
ss51024674	NES13910142	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ
rs38608676					SNP	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024674	NES13910142	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123026603 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584473	regulatory region 584473			1094 bp proximal
Rr584474	regulatory region 584474			1724 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant