rs38598804 SNP Detail

Summary

• ID
  rs38598804
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:99065181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCAGTTC CGCATGGCAG
  AGTTCGATGA CATCCTCATA CCCAGGAGGC CAATACTGCT TTGATCCAAG CAGCAGCTAG
  GATGCTCCTA CTTCATGGGA CAGAGACTCA GAAGCCCAGG CACACTCGTC ACTCTCTCCC
  TCTGTTCTTG CCTCTTTGGT CACCTTGTGC CACCCATTTA CTCTGAGGAC ACGGATTCAG
  W
  CATTCCTGTC TCTCGGTCCC CAGGCCTTCT TCAATCCAAC AGGGGTGAGG GGACAAGCCA
  TCTGTATTTT GGTTTAACTA CGTTAAAAAG ATTTTCTTTT GAGAAGTAAT TGCAAAAATC
  AGGTAGTCAT CTCTCTCATC CTTCATCAAC AAGCTTCCTG CAGGATATGA GGAATATTAC
  CGAGACCCAC AGCTGTCAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss51783679	NES14788803	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs38598804					SNP	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51783679	NES14788803	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99065181 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr635345	regulatory region 635345			374 bp distal
Tssr62271	transcription start site region 62271			676 bp upstream