rs38594413 SNP Detail

Summary

• ID
  rs38594413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135014128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCAGATA CAGATGCTGC
  ATCGTGGGTG GGTGCTGGAT TACCGATTCA TAGGTTTGAA GGTTCAGCAG ACACCTGCAT
  GTCTTCTCTG AGCTAAGCAG GCACAGGAGA TAATCACGTG TGGATTGCAT ACCGTTTCCA
  CCCTCCAGGA GTTCAGAACG CAGCTCTGGG ATCAGAGTAT GCCTAAACAA GACTTTAGAT
  Y
  CTGAGCATGC ACGCTGCTCT GGGGACGTGG GCAAAGTGAC AGCCCCCTGT AACTGTGATA
  CACACCAGGA GCACAAGCAA CATGGGGAAG AAAGATGTAT TTCATATCAC AGGCTCACAG
  TCCAAAGAAG GGAATTTGCG GTAGACACTC AAGGCAGGAA CTAAATAGAA GCTATGGAGG
  GATGCTGCTT ACAGGTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51033980	NES13903064	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38594413					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51033980	NES13903064	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135014128 () rs orientation: forward

Symbol	Name	Function Class
Gm46826	predicted gene, 46826	within coordinates
Rr585684	regulatory region 585684	612 bp distal
Rr585685	regulatory region 585685	within coordinates
Slc9b2	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	Intron
Tssr31804	transcription start site region 31804	661 bp downstream
Tssr31805	transcription start site region 31805	617 bp downstream