rs38591785 SNP Detail

Summary

• ID
  rs38591785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83544822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCGGAGTC CCTCCTGTGC
  AGCCTCCTGA TGCCCATAAA AAGCTGTGAA AGAATCCACA GGCTGCCTTA TTGTCTGTGC
  TCATCATGAA AGTATGTACT GATCCCACAT GCTGGAGATC TTTCTTCTAT ACTGGGGTCT
  GCAAAAGGCA ACACATTCCT TCAGCAGGAA AACTACTACC AAGAGGGGAG ATATGCCTGA
  Y
  GTCATTAAGA TGCCTGAACC ACGCTGGGAG GAAGGACAGA CATGCCTTTT AAATCCCGAA
  CTAAAGCATC CATGAAAGGT CCAGAACAAG ATTCTCAAGA GTGGGGGAGG CCGAAGGGTG
  GTGATGTAGA TGCCTACCTC CAGGCCCCTC CCCCACACTC CCGCTGTATG TAGTAACTGG
  TGAAGTGAGC CACTTGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51353805	NES13744951	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	T	T	T		T	T		C
ss133348381	ENSMUSSNP6748391	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321844563	CHEV_6_83517834	CHEVERUD	SCREENING_POP	f	SNP									C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38591785					SNP	C	T	C	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353805	NES13744951	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83544822 () rs orientation: forward

Symbol	Name	Function Class
Gm21284	predicted gene, 21284	199 bp upstream
Rr632893	regulatory region 632893	1130 bp proximal
Stambp	STAM binding protein	Intron