rs38583937 SNP Detail

Summary

• ID
  rs38583937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85240243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGTCTT CTGGCCTCAG
  CCAGCCTGTT GCTTGGCAAT GAGCTCAGGG GCAAAAGAGC AAAGGTGAAT GGGCTAGTTA
  GTCAACAGGT GTCACTCCTG TCACCTCCAG CTGAGACTGA GGGGCTTATC TGCTAGGCCA
  GGGGTCAGGC CTAATGCCTG TTTGATAGGG ACCACTGTGC TGGCTGCCAG GAACATTAGG
  Y
  CCTCTTCCTC CCAAGAATGG ATTCAGGGCT GCTGCCCAGG TCTGACTGGC CACTGCAGCA
  CCATCTGCAG GCTTCTGGTA CACTTCAGAT TCAGCTACTG GGTCTCTGCC ATGGCTCCTC
  CAACCCAGAA GTCATTTGAT AGGAAAGCAG CCTGGCGACC GACCGCCTGG ACCAGGATTC
  GTGGGTGCCA CTGTGCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51356233	NES13744214	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38583937					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51356233	NES13744214	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85240243 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr824	regulatory region 824			within coordinates
Rr633161	regulatory region 633161			within coordinates
Rr633162	regulatory region 633162			233 bp distal
Rr633163	regulatory region 633163			102 bp distal
Rr633164	regulatory region 633164			55 bp proximal
Rr633165	regulatory region 633165			1502 bp proximal
Sfxn5	sideroflexin 5			Intron
				Noncoding-Transcript-Variant