rs38579490 SNP Detail

Summary

• ID
  rs38579490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:22040447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATTAACT TTTATGAGCC
  CTACTGTTGA TCCTACTGGG AGAGAATAGG ACCATTATCC CAATTTTTGA GCCAAAATTA
  AAGTAAGTTT TATTAAATGC TGGCCAAGAC TATGGACTCT ACCCAGATCC ATACTCAGGA
  TTCCCAGAAA ACGGCCTCAC ACTGTGCTAA TCTGGTGATT ATAAAGGCAC AACCTACAAG
  R
  CTGTGTATTT GCTGCCTTGG GGGTAAGCAT ACATCCTGCC TATGTACTTC CTGGTCCATG
  TGATTAAGGA CATCCTGAGA AGTTGAAGCA ACCAACCTTG TTTACAGAAG TGAAAACATT
  TTCATGGCTT GTTATCTTGC ATGAATAGTA GCCCCCAGAA TCCAGGAAGT TATCTGTCCG
  TGGGCAGAGA AAGTTATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss51434032	NES14435590	PERLEGEN	MM_PANEL2	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs38579490					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51434032	NES14435590	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22040447 () rs orientation: forward

Symbol	Name	Function Class
Rr367416	regulatory region 367416	1453 bp upstream
Rr367417	regulatory region 367417	1935 bp upstream
Rr574179	regulatory region 574179	1792 bp distal
Rr574181	regulatory region 574181	1523 bp distal
Rr574182	regulatory region 574182	within coordinates
Rr574183	regulatory region 574183	1226 bp proximal
Tssr32754	transcription start site region 32754	1533 bp downstream
Tssr32755	transcription start site region 32755	1974 bp downstream