rs38579225 SNP Detail

Summary

• ID
  rs38579225
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117224846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTGGTCAT CTCATGGTAC TGGCATCTCC AAAACACTGC
  ATGACCCCTT CACATGACTA TTTTAAATTT GTCTCCACAC AGGCAATGTT TGGAATTGTT
  K
  CTGTGATAAA ACTTCTGCCG GGCTTTCCAG AAGATCCAGT TAAACGACAT CACATGCTGT
  ATTTGGTAGA CTTGGAATCA ACAATGTGTT TCTCCTGTGA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51011870	NES13912535	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38579225					SNP	G	T	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51011870	NES13912535	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117224846 () rs orientation: forward

Symbol	Name	Function Class
D3Mit299	DNA segment, Chr 3, Massachusetts Institute of Technology 299	844 bp proximal
D3Mit299.1	DNA segment, Chr 3, Massachusetts Institute of Technology 299.1	721 bp proximal
Gm66094	predicted gene, 66094	within coordinates