rs38569528 SNP Detail

Summary

• ID
  rs38569528
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32385424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCACCTGG AGGAAGGGCT
  CGGAACTCTG GACATTAGTT CTCTCTCCAC AACACCTGTT CGGTGCTGCA TCTAAATATA
  GAGACCCTAC TAGAACTTTT CTTGGTCCCT TCCCTGGCAC AGGCAACTTC TTCCAAGCAT
  GAACTTCTGA AGTCAGCACA CACCTATGCA GGTTTTAAAT GGCGGCTAGT CTCCTCCAGT
  Y
  GTGCTCATCA CCAAAGGACA TATGAGGTCT TAGCAAAAGA AATTATAACA GAAATAATAT
  CGTTCATTGA GTACTTAAAG TATGCCAGCT CTTTTGGTCA TGAACTTAGA AACTCCAAAT
  GAACAACAGC GAGTAAAGGG TCACATTATA GGGAAACTAA GTGAATCAGA ATAGAGAAAG
  ATTACTTTGA CCAGAGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51581550	NES14854669	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38569528					SNP	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51581550	NES14854669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32385424 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Rr628107	regulatory region 628107	297 bp distal