rs38569308 SNP Detail

Summary

• ID
  rs38569308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119653955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATCTGA TTGGTGGTTT
  TTCAGTAAAG ACATTTGCCT GCTATTTTAA CCTAAAATTC TCCTTTTCGA CTGAGAATTT
  CAGAGCCATG GATTAGCTCC TAAAGCCAAT GTTGAAAAGG ATATTTGAAA ATACCTGGAG
  AACACAGACA GCTTAGAAGA ATGATTGTCA TGGGCTAAAC GTAGGTCTCA TGGAGGAAGC
  R
  CTCAAGCCAA GAACACAGGA GGATACTTAC AGAATGAAGA CAACGTGGGA GCCAAACATG
  GAAGTAATGA AGTATGACAC TGGTGCCAAG CCTGGAGCAA AGTACAAAGC CAATGTAATT
  AATACATAAT GATTGATACA CAGTGCTGTG TGAGGCAGAT ATATAAATGG ATGGAAACTG
  AAAAGCCATG AGTCCCAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss51015286	NES13913550	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs38569308					SNP	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51015286	NES13913550	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119653955 () rs orientation: forward

Symbol	Name	Function Class
Rr583946	regulatory region 583946	1977 bp proximal