rs38563882 SNP Detail

Summary

• ID
  rs38563882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86993876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCTTGTG CATGCTAAAC
  ACCTGTTCTG CCTCTGGGTT GCACCCTAAC ACCAAATTAA ATCCCTGTGC TGATGCCTCT
  GCTGAGCACC TGAAGAAGGC ATAGGTAACC TCCTGTACGT GACTAAAGGC AGGCAAAAGT
  GAAGCTCACA AACTGTTTTT CAGACTCCTA GTTTATAAAT GTGCACCATT TTTCTGACTT
  R
  AACACAAACA CGCCATTTCT CAGAATGCAC CGTAGAACAT TTATTCATGC TTTTGATACA
  AACTATGACT TGGTGAACAT ACCTGTGTGC ATGTCTGCAT AAAATAAGTG TCTGCTTTGT
  ACTTCCACCC TCTCATGACC ATAGGTAAAG CAGAGGTGCC TAAGAGCACT CCCTGCTCCT
  GCAGTGGAGG CTAGTGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51746392	NES14795494	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38563882					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51746392	NES14795494	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86993876 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfu1	NFU1 iron-sulfur cluster scaffold			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr633575	regulatory region 633575			95 bp distal
Rr633576	regulatory region 633576			within coordinates
Rr633577	regulatory region 633577			232 bp proximal