rs38556725 SNP Detail

Summary

• ID
  rs38556725
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83435353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTTGCCTA TTATTTGATA
  GACGGGCTGG ATGTGAGGTG AAGAAAATAG CTTGAGTATT AGAGATGTCT GACTTCCAGA
  CTCGCCTCTA GCACTGGCAA CCTTGAACTG GGTACACACC ATCTCTCAAG AGCACCCAGA
  TAAAGTACTT AATATCGGTT TCACTGAGTG ACAAATGATT CTTATTGTTA ACGATAGAGC
  M
  GCTTTGTGAG CTAAGTATTG TCATTAGGTC AGCTGGTTAC TGCGCTGTGG AATCAGAAGC
  AGAACAGAAC AATTTGTGAT TTCTCCGGGT AATTGGCGGC AACAATTAAC CAATCTATCC
  TGCACCTTCC ATGGACCTCT TTGGCTCCGG TAACCTGATG GGATGCTGGT GTGTGCTGCA
  CACCAGGATA GAACACAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51355067	NES13747271	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	A	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38556725					SNP	C	C	C	C	C	C	A	C	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51355067	NES13747271	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83435353 () rs orientation: forward

Symbol	Name	Function Class
Gm67132	predicted gene, 67132	791 bp upstream
Rr632869	regulatory region 632869	1489 bp distal
Rr632870	regulatory region 632870	1346 bp distal
Rr632871	regulatory region 632871	309 bp distal
Tet3	tet methylcytosine dioxygenase 3	Intron
Tssr61653	transcription start site region 61653	1979 bp upstream
Tssr61654	transcription start site region 61654	1950 bp upstream
Tssr61655	transcription start site region 61655	1927 bp upstream
Tssr61656	transcription start site region 61656	1847 bp upstream
Tssr61657	transcription start site region 61657	1802 bp upstream
Tssr61658	transcription start site region 61658	1565 bp upstream
Tssr61659	transcription start site region 61659	1509 bp upstream
Tssr61660	transcription start site region 61660	1154 bp upstream
Tssr61661	transcription start site region 61661	828 bp upstream
Tssr61662	transcription start site region 61662	734 bp downstream