rs38554310 SNP Detail

Summary

• ID
  rs38554310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121891842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGGATGG TCGGACCCCA
  ACCCTGTGCT GTGCCTCTTC CCAAGGTGAC AAGGGGGAAA CCGGCTTGGA GGTTTTAAAA
  TAGATGTAAA CATTTGAGAA CCTGCTGAAT TCTGTGTTTC TCAGAGTATC AAGGTCCCCA
  TCTAGGGAAA CACATCAGGA AATATGACTA TGAATCAGCT GCCTGATTAA ACAGCCAGGA
  Y
  GGAGCCCACG TCATCGCAGG AGCCAACAAT ATCACCGAAA ACATCAGCTG TTTATTCCAG
  TATATTAAGA TATAAGGTTC AAAGAGAATG AGCTGATGCC CCTGGAAGTC ATGTTATTAA
  CACTGTATTT GTTTTTTTTT TTCCTATTTA ACACTGTATT TGTTTATATC AGCTCTATTT
  TCCCCAACAG TTAGACCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51021982	NES13907979	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38554310					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51021982	NES13907979	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121891842 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Rr584230	regulatory region 584230			726 bp distal
Rr584231	regulatory region 584231			1542 bp proximal