rs38553520 SNP Detail

Summary

• ID
  rs38553520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:91035795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTTCAAGT TGAGATATAG AAGTCTTTCT CTGAGCACCC
  CAATCCAAGG TCAAAAACAA AACAAAACAA AAGAGACGGT CATTGATTCT GCAGCAGACA
  Y
  TGGGGCTTAA GCCACCTGCA GGTTCTGAGT CTGTAACCCC CACCCCCACC CCACTTCCCA
  CTCCTTGATG TACCTCTTAC TGTAAACCAT CCTTACTGGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51365071	NES13736572	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38553520					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51365071	NES13736572	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91035795 () rs orientation: forward

Symbol	Name	Function Class
Nup210	nucleoporin 210	Intron
Rr634372	regulatory region 634372	562 bp distal
Rr634373	regulatory region 634373	835 bp proximal
Rr634374	regulatory region 634374	1048 bp proximal
Rr634375	regulatory region 634375	1145 bp proximal