rs38542770 SNP Detail

Summary

• ID
  rs38542770
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90606205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCATGTG TGTGTGCGTG
  TACATGTGTG TGTGTGTGTG TATGTGTATG TGTGTGTAGT CCTTCAGCCT TCTCCCTCCT
  GCGTACAGTG TGTGTAGCCC TTCAATCCCC TCTCTTTCTC TGGTACAGTG TGTGCACACC
  CTTTCGGCCT CTCTCTGTTG GATATGATGG ATGTGCCTCC TGCCTTACTG TTCTGGTTGA
  R
  GCCTGTCTTG GTGTTTCTTG CCCACAGTGC CTGGGCGAGT CTTGTGTGGC AGAGTCTTGT
  GGGCCTGTGG CTGAGTAGCT GAGAGATTAA AGCAGATCCA CAAGAAGAGG TCGGGTCAGG
  GGGTGACAAA GGCCCAACAC CGGGCATACC TCTCCTGCCT CTCTAGAACC TTCCATACTG
  TGAGCCTCAG GACTCACAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51361593	NES13741334	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38542770					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51361593	NES13741334	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90606205 () rs orientation: forward

Symbol	Name	Function Class
Rr634261	regulatory region 634261	314 bp proximal
Rr634262	regulatory region 634262	610 bp proximal
Rr634263	regulatory region 634263	828 bp proximal
Slc41a3	solute carrier family 41, member 3	Intron