rs38537696 SNP Detail

Summary

• ID
  rs38537696
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130740958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACACTGC TCCCTTTCAG
  CCAGTGTGAG AGCAGAGAGA TTGCTCTTCC CACGGTCCCA TGGAAACCGC ATCCTTTGAT
  AAAGAGAACC GCCAAGCAGG TTAACATCCA TCAGGTACAA CCGGACAGAA GCAAGGAGAT
  TATGACTCAG GGCATGTTGC GTTTTCTGGT GTGTTCCAAG CATATGTGTT GCCATATGCT
  S
  TGGTCTACTG TCACACACAG TCTGCTGTGT TCATTCTTTA CTGTCCTTGC TCAATTCCCC
  GATCTGTTGC CTGGTGAGAA ACTGTAAAGA TTGGGCTTTG AAGGCAGGAA GCAATACCCA
  ATTACACCTT GCACACAATA ATACGCCTCT ACAGTGGGCC CGACAAAACC ACATCCTCCA
  CTCAGCTGTC ACAGCGTAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51636326	NES14654858	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38537696					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51636326	NES14654858	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130740958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13830	CpG island 13830	936 bp distal
Gm65596	predicted gene, 65596	within coordinates
Rr585244	regulatory region 585244	within coordinates
Rr585245	regulatory region 585245	73 bp proximal
Tssr35670	transcription start site region 35670	6 bp downstream