rs38536993 SNP Detail

Summary

• ID
  rs38536993
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83435260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCT CTAGCACTGG CAACCTTGAA
  M
  TGGGTACACA CCATCTCTCA AGAGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51355069	NES13747270	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38536993					SNP	C	C	C	C	C	C	C	C	C	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51355069	NES13747270	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83435260 () rs orientation: forward

Symbol	Name	Function Class
Gm67132	predicted gene, 67132	698 bp upstream
Rr632869	regulatory region 632869	1396 bp distal
Rr632870	regulatory region 632870	1253 bp distal
Rr632871	regulatory region 632871	216 bp distal
Tet3	tet methylcytosine dioxygenase 3	Intron
Tssr61653	transcription start site region 61653	1886 bp upstream
Tssr61654	transcription start site region 61654	1857 bp upstream
Tssr61655	transcription start site region 61655	1834 bp upstream
Tssr61656	transcription start site region 61656	1754 bp upstream
Tssr61657	transcription start site region 61657	1709 bp upstream
Tssr61658	transcription start site region 61658	1472 bp upstream
Tssr61659	transcription start site region 61659	1416 bp upstream
Tssr61660	transcription start site region 61660	1061 bp upstream
Tssr61661	transcription start site region 61661	735 bp upstream
Tssr61662	transcription start site region 61662	827 bp downstream